Lving problems of complex lipid separation and characterization. Due to the structural variety of polar lipids, resolving lipids in their representative classes and species relies on the combined used of MS with chromatographic methods; this approach provides the possibility of separating and concentrating on different classes, taking into consideration their physicochemical properties. 4.3. Mass Spectrometry-Based Lipidomics as a Valuable Tool to Find New Bioactive Lipids from Marine Macrophytes The identification of the total lipid molecular profiles of marine plants has increased in the last several years due to the development of modern technologies, such as MS. In addition, a platform for analysis of the cellular lipidome directly from crude extracts of biological samples is becoming an get SIS3 attractive technique to lipid researchers. This technique allows for direct fingerprinting and quantification of hundreds of individual lipid molecular species in a single target MS or LC-MS analysis [123]. MS is a methodology widely used in lipid analysis due to its high sensitivity and capacity for identifying compounds. MS-based approaches can be either used in shotgun lipidomics or coupled to chromatographic methods. In shotgun lipidomics, lipids are identified and quantified directly from crude extracts through the direct infusion of lipids without chromatographic separation.Mar. Drugs 2016, 14,15 ofThis approach has been quite popular in the beginning of lipidomics due to its fast processing times, high reproducibility, accuracy, simplicity of operation and possibility of detecting various lipid classes in just a single run. However, it has some disadvantages that can be avoided by LC, such as ion suppression effects. The chromatographic separation prior to MS analysis can be performed either through off-line TLC or on-line HPLC. LC-MS-based methods have several advantages over off-line TLC-MS and even over direct infusion techniques. Besides reducing ion suppression effects, LC-MS allows for the identification and quantification of more than three hundred lipid species in a single run, as well as the identification and quantification of lipid molecules with the same molecular weight that can be present in different lipid classes; moreover, it is more reliable for the identification and quantification of individual molecular species, even when these are present at trace levels [37,68,124]. MS-based lipidomics analytical strategies play an important role in the identification of the lipid profile at molecular level of marine organisms. In the past several years, MS-based lipidomics has also been applied to marine macrophytes. More recently, ESI can be coupled on-line to LC prior to MS detection, which allows highly sensitive and accurate MS results, especially with more recent equipment, such as orbitrap spectrometers, that emerge as promising tools to identify biochemical signatures specific for marine macrophytes [125?27]. Polar lipids are often identified in MS spectra in AZD3759 site positive and negative modes, attending to the nature of the polar head group [128]. The phospholipids, PC, lysophosphatidylcholine (LPC) and SM, as well as betaine lipids (DGTS and DGTA) are formed preferentially by positive ions, namely [M + H]+ ions, while PI and PG are detected through the presence of negative ions, namely [M ?H]?ions. Classes such as PE and PS are easily detected due to their polar group (as they display both positive and negative ions). Neutral GLs are.Lving problems of complex lipid separation and characterization. Due to the structural variety of polar lipids, resolving lipids in their representative classes and species relies on the combined used of MS with chromatographic methods; this approach provides the possibility of separating and concentrating on different classes, taking into consideration their physicochemical properties. 4.3. Mass Spectrometry-Based Lipidomics as a Valuable Tool to Find New Bioactive Lipids from Marine Macrophytes The identification of the total lipid molecular profiles of marine plants has increased in the last several years due to the development of modern technologies, such as MS. In addition, a platform for analysis of the cellular lipidome directly from crude extracts of biological samples is becoming an attractive technique to lipid researchers. This technique allows for direct fingerprinting and quantification of hundreds of individual lipid molecular species in a single target MS or LC-MS analysis [123]. MS is a methodology widely used in lipid analysis due to its high sensitivity and capacity for identifying compounds. MS-based approaches can be either used in shotgun lipidomics or coupled to chromatographic methods. In shotgun lipidomics, lipids are identified and quantified directly from crude extracts through the direct infusion of lipids without chromatographic separation.Mar. Drugs 2016, 14,15 ofThis approach has been quite popular in the beginning of lipidomics due to its fast processing times, high reproducibility, accuracy, simplicity of operation and possibility of detecting various lipid classes in just a single run. However, it has some disadvantages that can be avoided by LC, such as ion suppression effects. The chromatographic separation prior to MS analysis can be performed either through off-line TLC or on-line HPLC. LC-MS-based methods have several advantages over off-line TLC-MS and even over direct infusion techniques. Besides reducing ion suppression effects, LC-MS allows for the identification and quantification of more than three hundred lipid species in a single run, as well as the identification and quantification of lipid molecules with the same molecular weight that can be present in different lipid classes; moreover, it is more reliable for the identification and quantification of individual molecular species, even when these are present at trace levels [37,68,124]. MS-based lipidomics analytical strategies play an important role in the identification of the lipid profile at molecular level of marine organisms. In the past several years, MS-based lipidomics has also been applied to marine macrophytes. More recently, ESI can be coupled on-line to LC prior to MS detection, which allows highly sensitive and accurate MS results, especially with more recent equipment, such as orbitrap spectrometers, that emerge as promising tools to identify biochemical signatures specific for marine macrophytes [125?27]. Polar lipids are often identified in MS spectra in positive and negative modes, attending to the nature of the polar head group [128]. The phospholipids, PC, lysophosphatidylcholine (LPC) and SM, as well as betaine lipids (DGTS and DGTA) are formed preferentially by positive ions, namely [M + H]+ ions, while PI and PG are detected through the presence of negative ions, namely [M ?H]?ions. Classes such as PE and PS are easily detected due to their polar group (as they display both positive and negative ions). Neutral GLs are.